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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146158731_146159812_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
146158731 - 146159812
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TGTGCTATAACG
Flanking Amino Acid:
KSVKCTTVFKDLKMKKTVKR
Intron Amino Acid Position:
843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.9
71.1
37.5
Major BPS
67.7
0.44
1
58
38.9
Major PPT
82.1
0.72
0.9
80.5
37
Minor 5ss
27.8
-2.5
4
39.4
46.5
Minor BPS
56.5
0.07
1.8
64.9
42.9

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455