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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146163355_146164753_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146163355 - 146164753
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
TATTGTGTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCCTTTTATT
Flanking Amino Acid:
VSRDLLHPSLILPLAHFSNK
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
71.8
34.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.8
0.56
1
68.4
41.9
Minor 5ss
37.2
-1.5
3.3
46.6
43.5
Minor BPS
61
0.43
1.6
76.99
39.9

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037365
146163298 - 146171883
8586