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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146164870_146167551_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146164870 - 146167551
Intron Length:
2682

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAAAA
U12 Branch Point Sequence:
GCTTTTTTAATA
Flanking Amino Acid:
KLEKAIKSYERRLNLVIWRA
Intron Amino Acid Position:
947

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.14
0.7
85.1
31.7
Major BPS
55.7
0.14
1
62.9
30.6
Major PPT
76.3
0.59
0.9
73.3
36
Minor 5ss
27.5
-2.6
3.9
40.7
45.5
Minor BPS
70.1
0.63
1.1
70.9
36

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000037365
146163298 - 146171883
8586