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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146179382_146179905_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146179382 - 146179905
Intron Length:
524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
GATGGTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTAGATGTAAAT
Flanking Amino Acid:
YTVLMFDNRKEHCVRSGLIK
Intron Amino Acid Position:
1166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
79.2
0.72
1
75
40
Major PPT
67.6
0.4
1.1
59
45.8
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
44.7
-0.3
2.2
66.73
43.8

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016387
146120392 - 146189047
68656
ENSAPLT00000047169
146120439 - 146203893
83455
ENSAPLT00000043896
146120392 - 146189047
68656