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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146180004_146184313_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146180004 - 146184313
Intron Length:
4310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTAACGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
CCTTCTTTAACG
Flanking Amino Acid:
IRMVQKVDYTIPDKETPKPY
Intron Amino Acid Position:
1198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
71.8
0.49
1
62.6
43.8
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
74.5
0.63
1.3
70.57
43.2

Associated Gene:

Gene:
VWA3B
Ensembl Gene ID:
ENSAPLG00000015715
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047169
146120439 - 146203893
83455
ENSAPLT00000043896
146120392 - 146189047
68656
ENSAPLT00000041876
146120439 - 146203893
83455
ENSAPLT00000016387
146120392 - 146189047
68656