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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146216876_146222019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
146216876 - 146222019
Intron Length:
5144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
CCTTCACAAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
43
-0.4
2.2
62.91
46.6

Associated Gene:

Gene:
CNGA3
Ensembl Gene ID:
ENSAPLG00000014458
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015072
146216805 - 146246594
29790