Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146231962_146234034_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

146231962 - 146234034

Intron Length:

2073

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACATGC

5'SS Class:

major

3'SS Sequence:

CTGTCCTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAG

U12 Branch Point Sequence:

TTTCAGTCAATG

Flanking Amino Acid:

SSFTGRGAMARLSRFVVSLR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.5

0.63

1.2

66.9

Major BPS

58.3

0.21

1.7

71.4

45.1

Major PPT

74.2

0.54

68.9

Minor 5ss

43.8

-0.7

2.9

44.6

Minor BPS

44.6

-0.5

2.3

58.25

43.4

Associated Gene:

Gene:

CNGA3

Ensembl Gene ID:

ENSAPLG00000014458

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048445

146220825 - 146246594

25770

ENSAPLT00000015072

146216805 - 146246594

29790