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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146256845_146257867_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146256845 - 146257867
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TCTTCCTTACTA
Flanking Amino Acid:
GGYTRDSLIIREFWEIVHSF
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
76.1
0.59
0.8
70.7
34.8
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
72.3
0.7
1.6
78.78
38.5

Associated Gene:

Gene:
UBE3A
Ensembl Gene ID:
ENSAPLG00000014628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015267
146256380 - 146300234
43855
ENSAPLT00000045336
146256380 - 146285901
29522
ENSAPLT00000042752
146256380 - 146282787
26408
ENSAPLT00000040862
146256380 - 146289772
33393
ENSAPLT00000036296
146256380 - 146278415
22036