Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146257942_146258033_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

146257942 - 146258033

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAATC

5'SS Class:

strong_major

3'SS Sequence:

CATCTTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

GTTTTTTAAAAT

Flanking Amino Acid:

EIELLICGSRNLDFQALEET

Intron Amino Acid Position:

769

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

35.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

82.6

0.73

0.8

76.1

32.1

Minor 5ss

37.6

-1.4

44.8

42.9

Minor BPS

58.4

0.34

1.7

77.19

39.4

Associated Gene:

Gene:

UBE3A

Ensembl Gene ID:

ENSAPLG00000014628

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015267

146256380 - 146300234

43855

ENSAPLT00000045336

146256380 - 146285901

29522

ENSAPLT00000042752

146256380 - 146282787

26408

ENSAPLT00000040862

146256380 - 146289772

33393

ENSAPLT00000036296

146256380 - 146278415

22036