Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146260366_146263938_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

146260366 - 146263938

Intron Length:

3573

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTATGTTAC

5'SS Class:

strong_major

3'SS Sequence:

TCATTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATCAT

U12 Branch Point Sequence:

TTGTTCAAAATC

Flanking Amino Acid:

VVEEIFNPDIGMFTYDESTK

Intron Amino Acid Position:

593

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

0.9

72.8

32.5

Major BPS

71.6

0.54

33.1

Major PPT

88.3

0.86

0.7

84.1

30.5

Minor 5ss

46.7

-0.3

2.5

57.4

41.8

Minor BPS

50.2

-0

1.9

66.31

Associated Gene:

Gene:

UBE3A

Ensembl Gene ID:

ENSAPLG00000014628

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015267

146256380 - 146300234

43855

ENSAPLT00000045336

146256380 - 146285901

29522

ENSAPLT00000042752

146256380 - 146282787

26408

ENSAPLT00000040862

146256380 - 146289772

33393

ENSAPLT00000036296

146256380 - 146278415

22036