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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146276458_146278401_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146276458 - 146278401
Intron Length:
1944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAT
5'SS Class:
major
3'SS Sequence:
ATGTTTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTACTTACTG
Flanking Amino Acid:
MKVSRKRAAAKHLI
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.5
39.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.9
0.58
1
69.4
41.2
Minor 5ss
32.5
-2
3.4
47.3
48.1
Minor BPS
55.6
0.04
1.9
63.96
44.3

Associated Gene:

Gene:
UBE3A
Ensembl Gene ID:
ENSAPLG00000014628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036296
146256380 - 146278415
22036