Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146276458_146282702_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

146276458 - 146282702

Intron Length:

6245

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTGCTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

TTGTACTTACTG

Flanking Amino Acid:

MKRAAAKHLI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

92.9

22.2

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

75.9

0.58

69.4

41.2

Minor 5ss

44.1

-0.6

2.9

65.1

39.1

Minor BPS

55.6

0.04

1.9

63.96

44.3

Associated Gene:

Gene:

UBE3A

Ensembl Gene ID:

ENSAPLG00000014628

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042752

146256380 - 146282787

26408