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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146276458_146285547_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146276458 - 146285547
Intron Length:
9090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTGTACTTACTG
Flanking Amino Acid:
PHSENIETSRMKRAAAKHLI
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
75.9
0.58
1
69.4
41.2
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
55.6
0.04
1.9
63.96
44.3

Associated Gene:

Gene:
UBE3A
Ensembl Gene ID:
ENSAPLG00000014628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045336
146256380 - 146285901
29522
ENSAPLT00000040862
146256380 - 146289772
33393
ENSAPLT00000015267
146256380 - 146300234
43855