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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146285593_146288904_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146285593 - 146288904
Intron Length:
3312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATATCTGTATTT
Flanking Amino Acid:
MATACKRSPGEPHSEN
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
69
41.8
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
83
0.74
0.8
77.1
36.1
Minor 5ss
32.3
-2
3
40
45.5
Minor BPS
48.4
-0
2.2
70.65
41

Associated Gene:

Gene:
UBE3A
Ensembl Gene ID:
ENSAPLG00000014628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040862
146256380 - 146289772
33393
ENSAPLT00000015267
146256380 - 146300234
43855