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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146289025_146289625_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
146289025 - 146289625
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
71.9
31.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78
0.63
0.9
77.5
36.7
Minor 5ss
30.1
-2.3
3.4
40.8
45.7
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
UBE3A
Ensembl Gene ID:
ENSAPLG00000014628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040862
146256380 - 146289772
33393