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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146289025_146296163_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
146289025 - 146296163
Intron Length:
7139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.2
38.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78
0.63
0.9
77.5
36.7
Minor 5ss
48.1
-0.2
2.5
64.1
42.5
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
UBE3A
Ensembl Gene ID:
ENSAPLG00000014628
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015267
146256380 - 146300234
43855