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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146316482_146319157_F

Intron Information:

Intron Rank:
124236
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
146316482 - 146319157
Intron Length:
2676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGCTCC
5'SS Class:
weak_major
3'SS Sequence:
TCTTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
60.1
39.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88.2
0.86
0.7
80.5
36.7
Minor 5ss
48
-0.2
2.8
70.3
39.8
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016968
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032331
146316155 - 146320719
4565