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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146329588_146331918_R

Intron Information:

Intron Rank:
144443
Intron Class:
major
Intron Phase:
Intron Coordinates:
146329588 - 146331918
Intron Length:
2331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TAAGCCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.1
37.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.9
0.79
0.7
81.9
28.8
Minor 5ss
42.2
-0.9
2.9
56.1
42.2
Minor BPS
62.7
0.48
1.6
75.2
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022272
146329417 - 146332180
2764