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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146331367_146331918_R

Intron Information:

Intron Rank:
144445
Intron Class:
major
Intron Phase:
Intron Coordinates:
146331367 - 146331918
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGCTTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.1
37.8
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
77.1
0.61
0.9
73.3
36
Minor 5ss
42.2
-0.9
2.9
56.1
42.2
Minor BPS
60.1
0.31
1.5
67.57
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024999
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033147
146329417 - 146332180
2764