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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146351446_146369361_F

Intron Information:

Intron Rank:
140157
Intron Class:
major
Intron Phase:
Intron Coordinates:
146351446 - 146369361
Intron Length:
17916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
63.3
0.49
1.7
82.97
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025267
146351183 - 146370906
19724