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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146400734_146401002_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146400734 - 146401002
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTGT
5'SS Class:
major
3'SS Sequence:
TCTCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTCATGT
Flanking Amino Acid:
IISPVVALLPRFLYRTLQGT
Intron Amino Acid Position:
1286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65
41.4
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.6
84.2
23.7
Minor 5ss
44.6
-0.6
3.1
65.1
46.2
Minor BPS
46.2
-0.2
2
66.8
44.7

Associated Gene:

Gene:
ATP10A
Ensembl Gene ID:
ENSAPLG00000014775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015455
146399636 - 146510061
110426