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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146401795_146403984_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146401795 - 146403984
Intron Length:
2190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGGTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
QLYKSGQNMEEYQPHMFWMN
Intron Amino Acid Position:
1162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
71.6
0.49
1
64.8
41.4
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
ATP10A
Ensembl Gene ID:
ENSAPLG00000014775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015455
146399636 - 146510061
110426