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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14640394_14669725_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14640394 - 14669725
Intron Length:
29332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTTCATAAAT
Flanking Amino Acid:
GGRVVVGLGIGVASMTVPVY
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.7
0.8
0.7
81.7
30.2
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
59.7
0.38
1.7
77.56
38

Associated Gene:

Gene:
SLC2A13
Ensembl Gene ID:
ENSAPLG00000030661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018184
14639835 - 14687013
47179