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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146418712_146418868_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146418712 - 146418868
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTCTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAA
U12 Branch Point Sequence:
ATCACTTTGACT
Flanking Amino Acid:
GLRTLCIAKRVLSKEEYACW
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
74.9
0.62
1
67.3
39.2
Major PPT
75.8
0.58
0.9
73.1
35.1
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
67.8
0.64
1.3
77.93
38.6

Associated Gene:

Gene:
ATP10A
Ensembl Gene ID:
ENSAPLG00000014775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015455
146399636 - 146510061
110426