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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146428886_146438134_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
146428886 - 146438134
Intron Length:
9249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTCA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CCACGTTTAACA
Flanking Amino Acid:
SGIEYSHDDNAKRLAMYQEP
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
65
37.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
79.6
0.67
0.9
78
30.8
Minor 5ss
39.2
-1.2
2.9
48.7
47
Minor BPS
49.8
-0
1.8
56.93
42.7

Associated Gene:

Gene:
ATP10A
Ensembl Gene ID:
ENSAPLG00000014775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015455
146399636 - 146510061
110426