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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146442333_146447936_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146442333 - 146447936
Intron Length:
5604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTAAATT
Flanking Amino Acid:
NNDLSRFRGYIIHKNGKKDG
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.8
0.6
0.9
70.6
40
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
63.7
0.51
1.6
79.54
37.3

Associated Gene:

Gene:
ATP10A
Ensembl Gene ID:
ENSAPLG00000014775
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015455
146399636 - 146510061
110426