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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14649862_14669725_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14649862 - 14669725
Intron Length:
19864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTTCATAAAT
Flanking Amino Acid:
QEWGICLRGKGVASMTVPVY
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.7
0.8
0.7
81.7
30.2
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
59.7
0.38
1.7
77.56
38

Associated Gene:

Gene:
SLC2A13
Ensembl Gene ID:
ENSAPLG00000030661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024794
14639474 - 14713344
73871