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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146524384_146525894_R

Intron Information:

Intron Rank:
140220
Intron Class:
major
Intron Phase:
Intron Coordinates:
146524384 - 146525894
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCCC
5'SS Class:
major
3'SS Sequence:
CATATGCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATATGCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
62.4
42.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.3
0.52
1
64.9
40.9
Minor 5ss
45.2
-0.5
2.7
60.3
44.3
Minor BPS
47
-0.3
2.1
55.91
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022818
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031209
146521161 - 146526409
5249