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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146594570_146641736_F

Intron Information:

Intron Rank:
129403
Intron Class:
major
Intron Phase:
Intron Coordinates:
146594570 - 146641736
Intron Length:
47167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGACAC
5'SS Class:
major
3'SS Sequence:
TCATGCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTAACATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
63.9
36.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.2
0.66
0.9
72.9
37.1
Minor 5ss
27
-2.6
2.9
30.6
36.6
Minor BPS
47.5
-0.1
2
66.64
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019589
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024100
146571074 - 146641945
70872