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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146595549_146596625_F

Intron Information:

Intron Rank:
126915
Intron Class:
major
Intron Phase:
Intron Coordinates:
146595549 - 146596625
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGTTTGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCCTAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
58.7
41.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
95.3
1.02
0.5
91.2
20.6
Minor 5ss
39.4
-1.2
3.1
49.8
41.8
Minor BPS
72.4
0.68
1.6
79.47
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018372
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044666
146595336 - 146597423
2088