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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146603641_146604471_R

Intron Information:

Intron Rank:
155309
Intron Class:
major
Intron Phase:
Intron Coordinates:
146603641 - 146604471
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
81.2
32.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.5
0.51
1
70.7
39.1
Minor 5ss
29.5
-2.4
3.1
40.4
45.5
Minor BPS
67.8
0.64
1.6
84.73
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031042
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041696
146603098 - 146605249
2152