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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146677316_146685449_F

Intron Information:

Intron Rank:
137216
Intron Class:
major
Intron Phase:
Intron Coordinates:
146677316 - 146685449
Intron Length:
8134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTACTTTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCATGTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79
0.65
0.8
73.3
36.5
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
54.8
0.15
1.9
65
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023890
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018521
146667832 - 146685707
17876