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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14676010_14686654_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14676010 - 14686654
Intron Length:
10645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CCTACTCTAATT
Flanking Amino Acid:
IEEEEKEVGAARDNNGRGLR
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.3
0.55
0.9
67
37.5
Minor 5ss
49.3
-0
2.5
64.8
46.5
Minor BPS
53
0.17
1.7
68.73
42.8

Associated Gene:

Gene:
SLC2A13
Ensembl Gene ID:
ENSAPLG00000030661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018184
14639835 - 14687013
47179