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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146856240_146856351_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146856240 - 146856351
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
CTCGCCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCGC
U12 Branch Point Sequence:
CTCGCCCCCACA
Flanking Amino Acid:
VLVAVVCCAQSVNDPGNMSF
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
28.8
-1.3
4.1
60.7
37.6
Major PPT
68.4
0.42
0.8
60.8
29.4
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
40.9
-0.7
2.2
51.63
46.1

Associated Gene:

Gene:
GABRB3
Ensembl Gene ID:
ENSAPLG00000015446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016148
146745846 - 146856431
110586