Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146859097_146865952_F

Intron Information:

Intron Rank:

141916

Intron Class:

major

Intron Phase:

Intron Coordinates:

146859097 - 146865952

Intron Length:

6856

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTCAT

U12 Branch Point Sequence:

TAGCTCATATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

79.5

36.8

Major BPS

70.9

0.52

1.1

71.4

36.6

Major PPT

93.7

0.98

0.6

88.2

29.1

Minor 5ss

42.2

-0.9

3.4

56.2

Minor BPS

46.5

-0.1

1.8

63.14

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026388

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046548

146857404 - 146865974

8571