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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146889597_146890077_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
146889597 - 146890077
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
67.3
36.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.4
0.75
0.8
81.5
29
Minor 5ss
32.2
-2
3.4
44
43.3
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
GABRA5
Ensembl Gene ID:
ENSAPLG00000015626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016340
146889461 - 146944202
54742