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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146890133_146890727_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
146890133 - 146890727
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTATTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTTTTTGTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
91.8
20.5
Major BPS
80
0.75
1
78.6
31
Major PPT
79.1
0.65
1
73
42
Minor 5ss
28.6
-2.5
4
44.4
43.7
Minor BPS
56.3
0.28
1.7
79.72
37

Associated Gene:

Gene:
GABRA5
Ensembl Gene ID:
ENSAPLG00000015626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016340
146889461 - 146944202
54742