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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146899220_146900392_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
146899220 - 146900392
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGACTGG
5'SS Class:
major
3'SS Sequence:
ATATTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTACAG
Flanking Amino Acid:
YDNRLRPGLGERITQVKTDI
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
53.9
45.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.9
74
39.6
Minor 5ss
41.2
-1
3.3
55.4
48.8
Minor BPS
47.8
-0.3
2
58.74
42.5

Associated Gene:

Gene:
GABRA5
Ensembl Gene ID:
ENSAPLG00000015626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016340
146889461 - 146944202
54742