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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146900461_146900573_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146900461 - 146900573
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CCTGCCATAACC
Flanking Amino Acid:
SFGPVSDTEMEYTIDVFFRQ
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
77.4
0.62
1
72.5
42.4
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
58.2
0.24
1.8
66.99
44.8

Associated Gene:

Gene:
GABRA5
Ensembl Gene ID:
ENSAPLG00000015626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016340
146889461 - 146944202
54742