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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146900795_146915158_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146900795 - 146915158
Intron Length:
14364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TCCTTCCTCACA
Flanking Amino Acid:
EDDGTLLYTMRLTISAECPM
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.4
33.9
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
81
0.7
0.7
75.6
26.6
Minor 5ss
34.8
-1.7
2.9
45
42.5
Minor BPS
48.6
-0.1
2.1
62.87
43.8

Associated Gene:

Gene:
GABRA5
Ensembl Gene ID:
ENSAPLG00000015626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016340
146889461 - 146944202
54742