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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146915242_146934279_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
146915242 - 146934279
Intron Length:
19038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
CCTGTGTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTGATCA
Flanking Amino Acid:
AHACPLKFGSYAYPNSEVIY
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.8
36
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
67.3
0.39
1
61.4
39
Minor 5ss
45.8
-0.4
2.8
69.7
40.4
Minor BPS
59.3
0.29
1.9
77.7
38.6

Associated Gene:

Gene:
GABRA5
Ensembl Gene ID:
ENSAPLG00000015626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016340
146889461 - 146944202
54742