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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146943008_146944080_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
146943008 - 146944080
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGATTG
5'SS Class:
major
3'SS Sequence:
TTGTTTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TAATTCTGAAAT
Flanking Amino Acid:
AESKKTYNSIMKTNQTTLRS
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
66.6
40
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.7
0.71
0.8
76.9
32
Minor 5ss
43.7
-0.7
3.1
62.1
43.2
Minor BPS
62.1
0.46
1.5
76.51
39.1

Associated Gene:

Gene:
GABRA5
Ensembl Gene ID:
ENSAPLG00000015626
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016340
146889461 - 146944202
54742