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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146951401_146954019_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
146951401 - 146954019
Intron Length:
2619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTATTTGATT
Flanking Amino Acid:
VFFLLSVFHARSRKVEEDEY
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
70.1
40.6
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
86.8
0.83
0.8
81.8
34.6
Minor 5ss
36
-1.6
2.9
47
41.2
Minor BPS
65.8
0.58
1.4
80.61
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002609
146951348 - 147279127
327780