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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146968925_146969072_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146968925 - 146969072
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTGTTTTCAGCT
Flanking Amino Acid:
SIGPVSSINMINLLCLFKRR
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.5
36.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
36.8
-1.5
3.4
46.6
43.5
Minor BPS
49
0.01
1.8
67.09
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046129
146953567 - 146992379
38813