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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_146968925_147131628_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
146968925 - 147131628
Intron Length:
162704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCGAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGATTTCAATT
Flanking Amino Acid:
SIGPVSSINMEYQIDIFFAQ
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.5
36.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.3
0.68
0.9
73.9
35.4
Minor 5ss
36.8
-1.5
3.4
46.6
43.5
Minor BPS
51.5
0.12
1.5
66.56
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002609
146951348 - 147279127
327780