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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14708331_14713313_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14708331 - 14713313
Intron Length:
4983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TGCTTTCACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGTGCTTTCACG
Flanking Amino Acid:
FQQLSGINTVMLPVPSRLSV
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
74
0.54
0.9
69.6
35.8
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
54.7
0
2
63.47
44.7

Associated Gene:

Gene:
SLC2A13
Ensembl Gene ID:
ENSAPLG00000030661
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024794
14639474 - 14713344
73871