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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147131850_147134137_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
147131850 - 147134137
Intron Length:
2288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAC
U12 Branch Point Sequence:
TGTTTAGTGACA
Flanking Amino Acid:
WNDGKILYTLRLTINAECQL
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
63.6
0.34
1.2
55.1
42.1
Major PPT
75.6
0.58
0.9
69
37.2
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
48
-0.1
2.3
67.79
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002609
146951348 - 147279127
327780