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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147231463_147263615_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
147231463 - 147263615
Intron Length:
32153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GCTATTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGTGCTATTACT
Flanking Amino Acid:
NTSEIVKTSAGDYVVMTIYF
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
73.6
0.53
0.9
66.6
39.3
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
49.4
0.04
2
73.71
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002609
146951348 - 147279127
327780