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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147273697_147278848_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
147273697 - 147278848
Intron Length:
5152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
GTTTATCAAACT
Flanking Amino Acid:
LPDVSFGHVMNYSVLDMRPP
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
48.3
-0
2.1
74.42
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002598
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002609
146951348 - 147279127
327780