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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_147388688_147395380_F

Intron Information:

Intron Rank:
137307
Intron Class:
major
Intron Phase:
Intron Coordinates:
147388688 - 147395380
Intron Length:
6693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTACAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GTTTTTACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.6
0.58
1
71.2
38.4
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
52.2
0.07
1.8
69.01
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045334
147379548 - 147395525
15978